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Anjana's questions

  • Anjana
    296 days ago
    Questions (0)

    When I tried Perl on my cluster/server it gives following error !! How to resolve it?

    $ perl
    perl: warning: Setting locale failed.
    perl: warning: Please check that your locale settings:
    LANGUAGE = (unset),
    LC_ALL = (unset),
    LC_PAPER = "de_BE.UTF-8",
    LC_ADDRESS = "de_BE.UTF-8",
    LC_MONETARY = "de_BE.UTF-8",
    LC_NUMERIC = "de_BE.UTF-8",
    LC_TELEPHONE = "de_BE.UTF-8",
    LC_IDENTIFICATION = "de_BE.UTF-8",
    LC_MEASUREMENT = "de_BE.UTF-8",
    LC_TIME = "de_BE.UTF-8",
    LC_NAME = "de_BE.UTF-8",
    LANG = "en_US.UTF-8"
    are supported and installed on your system.
    perl: warning: Falling back to a fallback locale ("en_US.UTF-8").

  • Anjana
    533 days ago
    Questions (1)

    I am using this perl code right nowadays.

    #!/usr/bin/perl use warnings; use strict;
    open(FASTA, "<", seq.fa) or die("Can't open\n"); my %singleLineSequences; my $sequence_id; while(){ my $line = $_; chomp($line); if ($line =~ m/^>(\S+)/){ $sequence_id = $1;
    $singleLineSequences{$sequence_id} = ""; } else { $singleLineSequences{$sequence_id} = $singleLineSequences{$sequence_id} . $line; } }

    foreach my $sequence_entry (keys %singleLineSequences){ my $currentSequence = $singleLineSequences{$sequence_entry}; my $lengthSequence = length($currentSequence); print $sequence_entry . "," . $lengthSequence . "\n"; }
  • Anjana
    592 days ago
    Questions (3)

    Is there any database exists which provides RNAseq data for different cancers stages?