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Trying to understand HiFi reads, any link could help ...

While installing XML::DOM::XPath

I got the following error

Makefile:820: recipe for target 'test_dynamic' failed

How to fix it ?

detect_collinear_tandem_arrays.cc:286:17: note: suggested alternative: 'getpt'
     while ((c = getopt(argc, argv, "g:b:c:o:")) != -1)
                 ^~~~~~
                 getpt
detect_collinear_tandem_arrays.cc:291:32: error: 'optarg' was not declared in this scope
             sprintf(gpath,"%s",optarg);
                                ^~~~~~
detect_collinear_tandem_arrays.cc:291:32: note: suggested alternative: 'opath'
             sprintf(gpath,"%s",optarg);
                                ^~~~~~
                                opath
detect_collinear_tandem_arrays.cc:307:17: error: 'optopt' was not declared in this scope
             if (optopt!='g' || optopt!='b' || optopt!='c' ||optopt!='o')
                 ^~~~~~
detect_collinear_tandem_arrays.cc:307:17: note: suggested alternative: 'getpt'
             if (optopt!='g' || optopt!='b' || optopt!='c' ||optopt!='o')
                 ^~~~~~
                 getpt
make: *** [makefile:6: mcscanx] Error 1
(base) ➜  MCScanx git:(master) ✗ ls

While installing Perl GD module, I got following error 

libgd not found !

I assembled the genome, by fragmenting(split) the read data in TWO set. After assembling both sets, I am just wondering what to do the next? How to validate? Is that everything is going alright?

I only use QUAST and it seems OK to me. Any other suggestions?  

Note: I assembled the genome with MIRA

I am problem installing Perl module on cluster/server without root. Can you please recommend me a easy way or alternative way to install it.

I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...

I am working on assembly of new genome. I am just wondering how to validate my assembled genome?