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Question: Question: What are the best way to merge paired end reads ?

Archana Malhotra
12 days ago

Question: What are the best way to merge paired end reads ?

I want to merge PE reads. Can you please suggest me good tools.

Answers
0

I recently used ABySS new program "abyss-mergepairs", source code https://github.com/bcgsc/abyss/blob/master/Align/mergepairs.cc

You can also try USEARCH https://academic.oup.com/bioinformatics/article/31/21/3476/194979

Hope useful.