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liftover

https://github.com/aaronwolen/liftover

Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly.

More at https://github.com/aaronwolen/liftover

https://www.bioconductor.org/help/workflows/liftOver/

Comments

  • Rahul Nayak 675 days ago

    This tool converts genome coordinates and genome annotation files between assemblies.  The input data can be pasted into the text box, or uploaded from a file.  If a pair of assemblies cannot be selected from the pull-down menus, a direct lift between them is unavailable.

    https://genome.ucsc.edu/cgi-bin/hgLiftOver