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OrganellarGenomeDRAW

http://ogdraw.mpimp-golm.mpg.de/index.shtml

OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical maps. The input text file has to be in GenBank flat file format, whereas the output format can be chosen among several formats. The application is especially optimized and adapted for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (plastome) or the mitochondrial genome (chondriome). Nevertheless, you can upload any GenBank entry. The workflow is devided into three steps. 

More at http://ogdraw.mpimp-golm.mpg.de/cgi-bin/ogdraw.pl