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CrossMap
CrossMap
Abhimanyu Singh
@abhimanyu
Public
By
Abhimanyu Singh
2782 days ago
Bioinformatics
Analysis
NGS
CrossMap
Genome
Coordinates
http://crossmap.sourceforge.net/
CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between
different assemblies
(such as Human
hg18 (NCBI36)
<>
hg19 (GRCh37)
, Mouse
mm9 (MGSCv37)
<>
mm10 (GRCm38)
).
It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.
CrossMap is designed to liftover genome coordinates between assemblies. It’s
not
a program for aligning sequences to reference genome.
We
do not
recommend using CrossMap to convert genome coordinates between species.
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