CrossMap
By Abhimanyu Singh 2782 days ago
http://crossmap.sourceforge.net/
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)).
- It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.
- CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome.
- We do not recommend using CrossMap to convert genome coordinates between species.
