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Watch out: only a few files are counted in coverage statistics.

Full documentation on Read the Docs.

A set of tools for viral metagenomics.

virmet is called with a command subcommand syntax: virmet fetch --viral n, for example, downloads the bacterial database. Other available subcommands so far are

  • fetch download genomes
  • update update viral/bacterial database
  • index index genomes
  • wolfpack analyze a Miseq run
  • covplot plot coverage for a specific organism

A short help is obtained with virmet subcommand -h.

More at https://github.com/ozagordi/VirMet