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  • RAMI: a tool for identification and characterization of phylogenetic clusters in microbial...

RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btp051

RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly.

Availability: RAMI is licensed under GNU GPL and can be run or downloaded from http://www.acgt.se/online.html.