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  • PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

https://github.com/itsmeludo/Phyloligo/

Genome sequencing projects sometimes uncover more organisms than expected, especially for complex and/or non-model organisms. It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies.

PhylOligo, a new package including tools to explore, identify and extract organism-specific sequences in a genome assembly using the analysis of their DNA compositional characteristics.