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  • Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

https://github.com/OpenGene/AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
AfterQC can simply go through all fastq files in a folder and then output three folders: goodbad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats