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ONT assembly and Illumina polishing pipeline
ONT assembly and Illumina polishing pipeline
Jit
@jit.aber
Public
By
Jit
2343 days ago
ONT
assembly
Illumina
polishing
pipeline
https://github.com/nanoporetech/ont-assembly-polish
This pipeline performs the following steps:
Assembly of nanopore reads using
Canu
.
Polish canu contigs using
racon
(
optional
).
Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using
BWA
mem.
Perform correction of contigs using
pilon
and the Illumina dataset.
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