Harvest: a suite of core-genome alignment and visualization tools
By Jit 2330 days ago
https://harvest.readthedocs.io/en/latest/
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees.
Tools
- Parsnp - Core-genome alignment and analysis
- Gingr - Interactive visualization of alignments, trees and variants
- HarvestTools - Archiving and postprocessing
