proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
By Jit 2296 days ago
https://github.com/BioInf-Wuerzburg/proovread
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
- outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392)
- is easy to install/run/configure
- supports various types of dat
- HiSeq/MiSeq (100-500bp)
- Unitigs
- 454, ...
proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in multiple iterations.
