Latest paper on comparison of mapping tools
By Rahul Agarwal 3882 days ago Comments (1)
http://www.biomedcentral.com/1471-2105/14/184
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013.
http://bmi.osu.edu/hpc/software/benchmark/
http://bmi.osu.edu/hpc/software/pmap/pmap.html
Other similiar papers:
http://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022
http://bioinformatics.oxfordjournals.org/content/28/24/3169
GSNAP
http://research-pub.gene.com/gmap/
RMAP
mrsFAST
http://mrsfast.sourceforge.net/Home
http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/
BFAST
http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page
SHRiMP (for AB SOLiD color-space reads)
http://compbio.cs.toronto.edu/shrimp/
RazerA 3
Comments
The recent revolution in sequencing technologies has led to an exponential growth of sequence data. To tackle this ‘data deluge’, here Lawrence Berkeley National Laboratory introduce the BioPig sequence analysis toolkit as one of the solutions that scale to data and computation.
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data http://bioinformatics.oxfordjournals.org/content/29/23/3014.short?rss=1