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miRNA database and tools: Revision

Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional and post-transcription levels. Here are some important DBs and tools related with miRNA:

miRNA Sequencing data analysishttp://tools.genxpro.net/omiras/

miRNApath( R based tool) :  http://www.bioconductor.org/packages/release/bioc/html/miRNApath.html

miRWalk DBhttp://www.umm.uni-heidelberg.de/apps/zmf/mirwalk/

TargetScanHumanhttp://www.targetscan.org/

RNAhybridhttp://bibiserv.techfak.uni-bielefeld.de/rnahybrid/welcome.html

RNA22 predictorhttp://cbcsrv.watson.ibm.com/rna22.html

miRNA predictorhttp://www.microrna.org/microrna/home.do

Plant miRNA DB :http://bioinformatics.cau.edu.cn/PMRD/

miRBASE DBhttp://www.mirbase.org/

Plant RNA predictor : http://plantgrn.noble.org/psRNATarget/

miRNA Interaction DBhttp://starbase.sysu.edu.cn/

Sequencing based miRNA DBhttp://mirgator.kobic.re.kr/

predicted A-to-I edited miRNA DB http://microrna.osumc.edu/mireditar/

Animal, plant and virus miRNA DBhttp://lemur.amu.edu.pl/share/php/mirnest/

Atlantic Salmon miRNAs DB : http://www.molgenv.com/ssa_mirnas_db_home.php

miRNA prediction on UTRshttp://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html

Idea of analysing miRNA Sequencing data :

http://www.illumina.com/applications/epigenetics/small_rna_analysis.ilmn

More:

http://www.bioconductor.org/help/search/index.html?q=miRNA+target