R and Bioconductor community

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### Next generation sequencing in R or bioconductor environment

Last updated 1295 days ago by John Parker Comments (3)There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It...- Public

### Statistical for biological research

By Neelam Jha 410 days agowww.nature.com - There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that...- Public

### R Graphs !!

By Jit 409 days ago Comments (1)rgraphgallery.blogspot.be - The blog is a collection of script examples with example data and output plots. R produce excellent quality graphs for data analysis, science and business presentation, publications and other purposes. Self-help codes and examples are provided....- Public

### Pacman

By Rahul Nayak 1036 days agoThe pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions.- Public

### Venn Diagrams on R Studio

By Jitendra Prajapati 602 days ago Comments (1)rstudio-pubs-static.s3.amazonaws.com - First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <-...- Public

### RCircos: an R package for Circos 2D track plots

By Jit 577 days agobitbucket.org - RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It...- Public

### R Graphical Cookbook by Winston Chang

By Abhimanyu Singh 409 days agoR Graphical Cookbook by Winston Chang A very nice book by Winston Chang for R ethusiast. The R code presented in these pages is the R code actually used to produce the Figures in the book. There will be differences compared to the code chunks...- Public

### ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and...

By Neelam Jha 601 days ago Comments (1)sc932.github.io - Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and...- Public

### Shinyheatmap

By Jit 423 days agohttp://shinyheatmap.com/ - Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in...- Public

### R and Bioconductor Tutorial

By Jitendra Narayan 1578 days ago Comments (62)manuals.bioinformatics.ucr.edu - This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic statistics. More...