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Users
About me: ....nlm.nih.gov/?term=Narayan+Jitendra Github @ https://github.com/jnarayan81 PhD thesis @ British Library https://ethos.bl.uk/OrderDetails.do;jsessionid=E6D7E9292B1198B4ABE690F3E41D2BD8?uin=uk.b...8 hours ago
3911 days ago
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Blogs
Five unique traits of effective computational biologist
...effective because they lack the other important traits needed. Here are top five traits that are necessary to become a great biological programmer. 1. Learn and get updated Some...3940 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...@INC contains:/usr/lib/perl5/5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_p...@INC contains:/usr/lib/perl5/5.10.0/i386-linux-thread-multi/us...p; 00:00(3/5): perl-CPAN-1.9205-31.fc9.i386.rpm &nb...wly installed, 0 to remove and 10 not upgraded. In it is foun...3940 days ago
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Bookmarks
Best practices in bioinformatics training for life scientists
...understand their underlying fundamental theoretical and practical concepts. Find the detail paper at http://bib.oxfordjournals.org/content/early/2013/06/25/bib.bbt043.full...3908 days ago
- ...Supported Perl VersionsThreaded Perl with a shared libperl 5.8, 5.10, 5.12, 5.14, 5.16Supported Operati...p; Mac OSX 10.4 and 10.5 - ppc and i386. Mac OSX 10.6, 10.7, 10.8 - i386 and x86...
3907 days ago
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Files
Bioinformatics approach to Boar Taint
...pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples mapped to Sus Scrofa version 10.2 reference assembly using B...3779 days ago
India's own first drug - from Biocon.
Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Indians and it attacks the immune system of human beings. In gener...3910 days ago
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Discussion topics
- ...edundancy can be used to store them in a much smaller storage space. (Source:e-article from Alex Armstrong) http://www.i-programmer.info/news/181-algorithms/4537-a-new-dna-seq...
3910 days ago
Want to Know which genome assembler rule the world ?
...ods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.natur...bly-contest-prompts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-analysis-o...3910 days ago
Pages
Bio++ : C Language libraries for your biological need
...amming? If yes there is good news for you. Bio++ 1.9.0 is available with amazing...requencies.Various codon models: Muse & Gaut 1994, Yang & Nielsen 1998,...umd.edu/~jeallen/bioinfo/Tutorial on Bio++http://162.38.181.25/BioPP/articles/tu...3938 days ago
- ...eatures. Ruby originated in Japan during the mid-1990s and was initially develop...Perl, Lisp, Dylan, Pike, and CLU. The standard 1.8.7 implementation is written...roviding ahead-of-time compilation. The official 1.9 branch uses YARV, as will 2...
3937 days ago
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Top-level pages
- ...lines within bioinformatics: (1) the development of new algor...g in biology goes back to the 1920s when scientists were alre...ults. For example, SWISSPROT [1] contains verified protein se...Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI&ndas...
3937 days ago
- ...ext/dmwhite/dmwhite.htm Wiki Links: http://en.wikipedia.org/wiki/Data_miningBioinformatics with Clementine http://www.spss.ch/upload/1051192224_inseratClemBio.pdf ...
3936 days ago
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Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3942 days ago
- ...al software. Recently useR! conference have been organized University of Castilla-La Mancha, Albacete, Spain. http://www.edii.uclm.es/~useR-2013//
3942 days ago
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Opportunity posts
- ...the DFG Research Training Group GRK 1907 “Role-based Software Infra...s the positions of 6 PhD Students (E 13 TV-L) for applicants inte...arch programme will start on October 1, 2013 until 30.09.2016. The p...ned and encrypted form by July 30, 2013 (stamped arrival date of the...
3938 days ago
- ...tific and Industrial Research) PALAMPUR (H.P.)-176 061 Advertisement NO.14/2013...ned against each position positively by 05.08.2013. 1. Name of Position: Res...pmi@ihbt.res.in Age: 35 years as on d5.08.2013. Age Relaxation: 5 years...
3934 days ago
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ResearchLabs posts
- ...y-ibitec-s/unites-de-recherche/service-de-biologie-integrative-et-genetique-moleculaire-sbigem/laboratoire-de-biologie-integrative-lbi/presentation__1
3909 days ago
- ...Director for two start-up companies (Leadinvent incubated at IIT, Delhi from 2006-2009 & Novoinformatics, under incubation at IIT Delhi since 2011). Research Interest Geno...
3938 days ago
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Fun
Bioinformatician become producer/director !!!
...Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hu...i PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm...3909 days ago
Perl Poem: Parse it in both Perl and English!
...as well as a paper on Perl poetry that she presented at the Usenix Winter 1992 Technical Conference, enti...ways), length(of-days) # listen (a perl poem)# Sharon Hopkins# rev. June 19, 19953909 days ago
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Video
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza. Client: Crucell Direct...3843 days ago
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3860 days ago
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Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...st: Download ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web brow...e defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1137 days ago
Count the frequency of base G in a given DNA sequence
...letter in the sequence check if it is the base G #if 'yes' increment $countG while($currentPos < $DNAlength){ my $base = substr($DNA,$currentPos,1); if($base eq "G"){ $cou...2907 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...Institute, I am working in the field of cancer bioinformatics. Briefly, the overall aim of the project which I am working for (AKMARK (Project CODE:5153403)) is, applying a bioinfo...2352 days ago
Groups
...ing Language) is a family of high-level, general-purpose, interpreted, dynamic programming languages. Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix ...3943 days ago
...nced by Eiffel and Lisp. Ruby was first designed and developed in the mid-1990s by Yukihiro "Matz" Matsum...ne of a number of Bio* projects designed to reduce code duplication. In 2011 the BioRuby project introduc...3910 days ago
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Tags
how could be a molecular dynamics be helpful studying the protein's conformation
give your viewsTags: 1
3478 days ago
Comments
Comment on "Benchmarking Perl Module !"
...s to run and a reference to the benchmark subroutine. Here's an example of how to call the timethese function to run the benchmark for 100 iterations: timethese(100, { 'MyModule' => \&b...405 days ago
Comment on "A quick guide to Phred scaling"
...the more confident we are in the base call. For example, a Phred score of 10 corresponds to a base call a...scale: The Phred scale is logarithmic, which means that each increase of 10 in the Phred score correspon...405 days ago
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