Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular...2369 days ago
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3d-dna: 3D de novo assembly (3D DNA) pipeline
...L4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Unless otherwise noted, all...2302 days ago
Carefully opt for human reference genome
...are several other versions of GRCh37/GRCh38. What’s wrong with them? Here are a collection of potential issues: More at http://lh3.github.io/2017/11/13/which-human-reference-g...1521 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...Soeding J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology, doi: 10.1038/nbt.3988 (2017).2218 days ago
SciLifeLab tutorial for bioinformatics analysis !
...2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduct...16 September - Uppsala2016 November - Umeå2017 January - Uppsala2017 May - G...De Novo Genome Assembly 2016 November - Uppsala2017 November - Uppsala RNA-seq c...2193 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...reference:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads." bioRxiv (2017): 125534.2166 days ago
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SALSA: A tool to scaffold long read assemblies with Hi-C
..., please cite our publication which describes the methods used for scaffolding. Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read as...2134 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...hat implements the algorithm is available at: http://faculty.cse.tamu.edu/shsze/asplice. Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM. (2017) A scalable and memory-effici...2116 days ago