Results for "3D genome"
Blogs
Five points for bioinformatics software/tools
...s does not absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At...3688 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research...igned to provide a visual means for simultaneously comparing genomes of multiple amniote species....
3921 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3926 days ago
- ...derlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein s..., analyzing gene expression, constructing evolutionary trees, analyzing genome rearrangements, and identifyi...
3926 days ago
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Files
- Some fish kidnaped a bioinformatician for their genome analysis.
3834 days ago
- Alien spy are looking for human genome sequences ..
3820 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a l...3933 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3926 days ago
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Pages
BioRuby :Ruby packages for biologist
...ioRuby project provides an integrated environment in bioinformatics for the Ruby language. This project is supported by University of Tokyo (Human Genome Center), Kyoto University(Bio...3928 days ago
- ...ics curriculum. By Russ Altman. Human Genome Research A description of the Human Genome Project. Retooling for Bioin...a WWW search. Understanding the human genome By D. L. Brutlag, in&nbs...sp;April 2001 Bioinformatics U., Genome Technology, September, 2001&n...
3902 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA...ion sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...cally suitable language to handle ever growing genome or protein sequences. The ne...
3929 days ago
- ...nsive electronic databases on genomes and protein sequences, and t...s on three types of datasets: genome sequences, macromolecular str...s DataBase for the C. elegans genome, FLYBASE for D. melanogaster...lds can be analysed for whole genomes. Protein–protein inter...
3928 days ago
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Wire posts
News
- ...ticles/5052/20131123/oldest-dna-sequenced-done-breakthrough-technology.htm http://geogenetics.ku.dk/latest-news/a-700.000-year-old-horse-gets-its-genome-sequenced/
3793 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science meeting aims to bring together experts from around the...3900 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
...e participant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome d...3910 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...lthcare conference. In the ten years since the first human reference genome was completed for US$3 billio...ly changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US...3904 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium...uence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing...
3929 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays have revoluti...
3929 days ago
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Fun
Bioinformatician become producer/director !!!
...will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Seq...3900 days ago
What a bioinformatician always dream for ???
...ell established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy wi...3826 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...as decoded the natto bacillus genome, through analysis using Keio'...3898 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...hington DC Local Description: There is an urgent need to translate genome-era discoveries into clinical...sease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesd...3891 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1117 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -quer...1082 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing...3397 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...nformatics. Briefly, the overall aim of the project which I am working for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and...2343 days ago
Groups
...alising. By taking a glass from which you have drunk, a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA variants that...tional biologist or bioinformatician you hack the entire genome to understand the god's writt...3934 days ago
...odels Gibbs sampling for motif finding Biclustering algorithms Genome Assembly Developement of n...to speed up the assembly procedure Comparative genomics approaches in genome assembly. Evolutionary G...3924 days ago
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Tags
- There are several interesting factoid about our genomes, one of them is their folding. If we stretched out the DNA in a single cell, which is only a few millionths of an inch wide, it would span more than six feet. In other word, the size of six feet DNA fold themself to fit in a few millionths o...
Tags: Bioinformatics, Computational biology, Video, 3D genome, Origami, Human
3412 days ago
- ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://www.ncbi.nlm.nih.gov/pubmed/19815776). There are two options to run ShRec3D (on linuX only so far): the first one...
Tags: Bioinformatics, Computational Biology, ShRec3D, 3D genome, Genome, Hi-C, Chromosome
3399 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...is the process of constructing a genome sequence from a large number...ing reads. SPAdes (St. Petersburg genome assembler) is a popular softw...the directory where the assembled genome will be saved, "forward_reads...ess and accuracy of the assembled genome by comparing it to reference...396 days ago
- ...short read simulator that generates synthetic reads based on the whole genome sequencing technology. It can...is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is design...
396 days ago
- +98 more Comments
