578 days ago
2185 days ago
2919 days ago
ALE: Assembly Likelihood Estimator
Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.412 days ago
Genome Assembly Tools and Software - PART2 !!
...exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. KGB...r contigs that were output from a prior run of PRICE or any other ALE 20130717 – Assembly Lik...2674 days ago
Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly
2919 days ago
ALE: Assembly Likelihood Estimator
Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.Tags: ALE, Genome, Assembly, Likelihood, Estimator
412 days ago