Results for "ANnotation"

Bio-Scripts

  • get GC across the entire CDS !

    #look at GC across the entire CDS. gffread -x - -g | \ seqtk comp - | \ awk -v OFS="\t" '{ print $1, "0", $2, ($4 + $5) / $2 }'

    1355 days ago

  • Install gffread using Conda !

    ..../GCF_0355.2_L0_genomic.gff ../../GCF_001039355.2_L0_genomic.fna > La.cds.fa #Find more at http://blog.shenwei.me/extract-cds-fastas-from-a-gff-annotation-reference-sequence/

    1166 days ago