Results for "Algorithm"
Users
About me: ...s and computational biology, I mainly focus on chromosomal breakpoint and amniotes evolution. I (We) develop certain computational pipeline, and algorithms to harness the huge amount o...60 days ago
- Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .Skills: Bioinformatics; Algorithm: Perl
2906 days ago
- +6 more Users
Blogs
Computer simulation of genetic mechanism !!
...e Bayesian computation. https://sites.google.com/site/baysicsabc/ BEERS BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct diff...2956 days ago
Tools and Method for Haplotype phasing !
...ople.fas.harvard.edu/~junliu/plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-backed_phasing_algorithm SHAPE-IT: http://www.gr...1320 days ago
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Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
...ons of selected computer science algorithms important in bioinforma...ng platform for demonstration of algorithms, since various steps of the...programming experience. The algorithms demonstrated include two app....org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3685 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2932 days ago
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Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...elopment of reliable knowledge –based potentials that can be used for automatic prediction of trans-membrane (TM) protein structure. While algorithm for identification of TM segm...3926 days ago
Pages
Bio++ : C Language libraries for your biological need
...sufficiently abstract and fluent to describe algorithms and interactions in a wide v...ic databases like GenBank, EMBL or SwissProt,Algorithms for plotting trees, with sup...imum likelihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree recon...3929 days ago
Genome Assembly Tools and Software - PART2 !!
...pass 0.7.7 – A Cycle-Basis Algorithm for Accurate Haplotype Assemb...h 1.2.1 – Network Matching Algorithm to Gene AssemblyGeneStitch&nb...tome AssemblyIsoLasso is an algorithm to assemble transcripts and e...-ASM (Short Reads ASseMbly) algorithm is designed for DNA assembly...2667 days ago
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Top-level pages
- ...ant sub-disciplines within bioinformatics: (1) the development of new algorithms and statistics with which to...ture, prediction of protein function, and expression data clustering. Algorithmic development is an important...
3928 days ago
- ...heir expectations.This page Covering theory, algorithms, and methodologies, as well...ssify an email as legitimate or spam. Common algorithms include decision tree learni...the classic machine learning and data mining algorithms. For detail visit: http...
3927 days ago
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Wire posts
News
- A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalpel, which is ope...
3527 days ago
Artificial intelligence is more accurate than doctors in diagnosing breast cancer
...m Google Health and Imperial College London, designed and trained a computer model on X-ray images from nearly 29,000 women. The algorithm outperformed six radiolo...1566 days ago
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Opportunity posts
- ...(s) : One Stipend: Rs.22,000/- P.M. (consolidated). Essential Qualifications: Ph.D. in Bioinformatics. Desirable: Working experience in algorithm development and sequence anal...
3925 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...puter science and modelling, including Machine learning, Data mining, Algorithms, Computational Logic, Cloud...ves, and children's day care services. Positions are offered in: Algorithm engineering (String Algorithm...3875 days ago
- +7 more Opportunity posts
ResearchLabs posts
Computational Structural Biology Lab IITKGP
...in interactions. Development of protein-protein, protein-RNA docking algorithm and prediction of binding sit...of RNA binding site in proteins. Study of miRNAs and development of algorithms for miRNA and traget predict...3211 days ago
- Shirley is a computational biologist with expertise in cancer epigenetics. Her research focuses on algorithm development and integrative mining from big data generated on microarrays,...
1533 days ago
Fun
Bioinformatician become producer/director !!!
...s Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm Se Program Tak Haan Maine Bh...3900 days ago
Video
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm3861 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2886 days ago
Genetic Algorithms demonstration with word DNA in Perl
...d elements # originally written by Abigail # Documentation for the algorithm is at # http://theoryx5.uwin...ved => 1, parent => 0, fitness => 0 }; } } __DATA__ about algorithm and biology by century c...2353 days ago
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Tags
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGraph --read1 reads_1.fa --read2 reads_2.fa --contig contigs.fa --genome genome.fa --distanceLow distanceLow --...Tags: AlignGraph, algorithm, secondary, de novo, genome, assembly, guided, references
2191 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig region, including its true genome region’s repeats i...Tags: HALC, algorithm, long, read, error, correction, NGS, PacBio, Nanopore
2139 days ago
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Comments
Comment on "Tools for RNA classification"
...a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA sequences. It...402 days ago
Comment on "URMAP, an ultra-fast read mapper"
...or threads to use for mapping. Default is the number of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster but somew...1264 days ago
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