Bioinformatics Algorithm Demonstrations and Tutorials
...ons of selected computer science algorithms important in bioinforma...ng platform for demonstration of algorithms, since various steps of the...programming experience. The algorithms demonstrated include two app....org/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3689 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2936 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard so...2914 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...e) in the 1000 Genomes Project. To provide highly accurate alignments, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited t...2891 days ago
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OPERA : Optimal Paired-End Read Assembler
...n as Scaffolding. OPERA is based on an exact algorithm that is guaranteed to minimiz...onwards) including refinements to its basic algorithm (to reduce local errors, impr...e manuscript describing the new features and algorithms is available at Genome...2780 days ago
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