Results for "Algorithms"

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  • Bioinformatics Algorithm Demonstrations and Tutorials

    Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of algorithms, since various steps of the calculatio...

    Tags: Bioinformatics, Algorithms, Excel Demonstration

    1351 days ago

  • Bioinformatics algorithms tutorials

    Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on PrimerIntroduction to PERL, Python, R and C/C++ for Bioinfo...

    Tags: Bioinformatics, Computational Biology, NGS, Tutorial, Algorithms, Concept

    1250 days ago

  • Rosalind Bioinformatics problems !!!

    Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/

    Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind

    1073 days ago

  • Tetra-Nucleotide Analysis

    A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the informat...

    Tags: Bioinformatics, Tetra-Nucleotide, Analysis, Frequency, DNA, Phylogeny, Algorithms

    205 days ago

  • International Conference on Bioinformatics Models, Methods and Algorithms

    The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together researchers and practitioners interested in the application of computational systems and information technologies to the field of molecular biology, including for example the use of s...

    Tags: bioinformatics, algorithms, sequencing

    1147 days ago

  • Algorithms for DNA Sequencing (course offered each month)

    "We will learn computational methods -- algorithms and data structures -- for analyzing DNA sequencing data. We will learn a little about DNA, genomics, and how DNA sequencing is used. We will use Python to implement key algorithms and data structures and to analyze real genomes and DNA sequencin...

    Tags: algorithms, bioinformatics, DNA sequencing

    853 days ago

  • CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms

    Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized the field of bioinformatics, and is currently i...

    Tags: CrocoBLAST, Optimized, parallel, local, sequence, alignment, algorithms

    123 days ago