FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FS...Tags: Bioinformatics, FSA, Fast, Statistical, Alignment, DNA, Sequence
2630 days ago
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp
2619 days ago
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D
2619 days ago
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos
2619 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing addi...Tags: Bioinformatics, Laj, View, Alignment, Lastz
2607 days ago
Tags: Bioinformatics, Cgaln, Alignment, Genome
2614 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM
2612 days ago
Tags: Bioinformatics, Alignment, DIAMOND, BLAST, DNA, Protein
2550 days ago
Tags: Bioinformatics, Alignment, NGS, Mapping, Tutorial
2545 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled...Tags: Bioinformatics, Alignment, Assembly, PAGIT, ABACAS, iCRON, RATT, IMAGE
2535 days ago