Results for "Alignment"


  • AVID: A Global Alignment Program

    A new global alignment method called AVID. The method is...icient, and practical for sequence alignments of large genomic regions the comparison of assemblies to alignment of large syntenic genomic reg...a format for the representation of alignments and methods for their compar...

    57 days ago

  • Cgaln

    Cgaln (Coarse grained alignment) is a program designed to align a pair of who...a nominal desktop computer. Cgaln performs an alignment job in two steps, at the bloc...nucleotide level. The former "coarse-grained" alignment can explore genomic rearrange...

    148 days ago

  • BIMA V3: an aligner customized for mate pair library sequencing

    ...bnormalities. Unfortunately, the mapping and alignment of mate pair read pairs to a...ging and time consuming process for most NGS alignment programs. Large insert sizes,...eakpoints within reads increases mapping and alignment complexity. We describe an al...

    218 days ago

  • Comparison of Short Read De Novo Alignment Algorithms

    Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms  Author: Nikhil Gopal

    1429 days ago

  • Alignment of closely related whole genomes/scaffolds

    ...udy of populations, pan-genomes, and genome evolution.This bookmaks have been created to report new tools for whole genome alignments. Please report new whole genome alignment tools under comment sections.

    538 days ago

  • TMAP - torrent mapping alignment program General Notes

    TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest...

    109 days ago

  • Bioinformatics tools and software

    ...han BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate tha...enomes. QSCORE >Compare two multiple alignments for benchmarking. PALS...A benchmark collection >Selected multiple alignment benchmarks in a standardized...

    380 days ago

  • COCACOLA (binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge)

    COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end r...

    135 days ago


    ...sembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify synten...domolecule taking overlaping contigs and gaps in to account. MUMmer's alignment generating programs, Nucmer a...

    154 days ago

  • FSA: Fast Statistical Alignment

    ...imates, FSA builds a multiple alignment using only pairwise estimatio...e for constructing a multiple alignment from pairwise comparisons, de...thods for constructing better alignments: FSA uses machine-learnin...e included GUI, MAD (Multiple Alignment Display), can display the int...

    164 days ago