Results for "Alignment"
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...structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as...lized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, ...2705 days ago
- ...ers of velvet, and the process involved in producing a de novo assembly from Illumina reads. http://evomics.org/learning/assembly-and-alignment/velvet/
2694 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...bnormalities. Unfortunately, the mapping and alignment of mate pair read pairs to a...ging and time consuming process for most NGS alignment programs. Large insert sizes,...eakpoints within reads increases mapping and alignment complexity. We describe an al...2689 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...e contiguity and correctness of both. GAM-NGS does not rely on global alignment: regions of the two assemblie...ic locus (called blocks) are identified through reads' alignments and stored in a weighte...2684 days ago
- ...eshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignment. Train alignment parameters for unusual kinds...
2684 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of who...a nominal desktop computer. Cgaln performs an alignment job in two steps, at the bloc...nucleotide level. The former "coarse-grained" alignment can explore genomic rearrange...
2619 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit processor and build...
2655 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...uch analyses are often based on whole-genome alignments to elucidate structural diff...omputational tools that can visualize genome alignments in a meaningful manner are n...formatics/article/28/12/i7/268598/GenomeRing-alignment-visualization-based-on2654 days ago
- ...ccurate as BWA-SW at finding the single best alignment per query and is dramatically...SSAHA2 and MegaBLAST at finding all possible alignments. Unlike other aligners that...ted acyclic graph to find the optimal set of alignments that cover a query using a b...
2652 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing tho...ogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignments, trees and variants Harvest...
2641 days ago
