2541 days ago
2527 days ago
2527 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is...icient, and practical for sequence alignments of large genomic regions up...om the comparison of assemblies to alignment of large syntenic genomic reg...a format for the representation of alignments and methods for their compar...2521 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...sp; Mapping position agnostic to alignment parameters. ...l mapping quality. Various alignment strategies (semiglobal bit-ve...ired.Currently, development of a new spliced-alignment mode for mapping RNA-seq read...2507 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and...2463 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid se..., or the nucleotide sequences of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revol...2459 days ago
2453 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package co...l;the, M. Kirchner, F.A. Hamprecht (2011). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioinfor...2337 days ago
2332 days ago