List of Bioinformatics Software Tools for Next Generation Sequencing
...sease discovery, whole genome alignment, etc. Data can be imported f...Ps; reports variants based on alignment; haplotype based Input: BAM-...: detects SNVs from NGS, post-alignment tool Input: pileupformat (Ma...nt pipeline: command link for alignment of NGS reads and online versi...2871 days ago
2831 days ago
Genome Assembly Tools and Software - PART1 !!
...e COmposition, Read CoverAge, CO-alignment, and Paired-end Read LinkAge...quences are ordered based on the alignment to the reference. Third, non-...y Improvement pilon uses read alignment analysis to diagnose, report,...ash; DNA Sequence Assembly & Alignment CodonCode Aligner is a pro...2647 days ago
Awesome perl frameworks, libraries and software - PART 1
...lAlign is an open-source software toolkit for robust long speech-text alignment implementing an adaptive, iterative speech recognition and text alignment scheme that allows for the pr...2451 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...quantification from RNA-seq data (uses pseudoalignment for rapid determination of re...fcluster QCluster Clustering of reads with alignment-free measures (k-mer based) a...hylogeny of species based on NGS reads using alignment-free sequence dissimilarity m...2333 days ago
2312 days ago
List of visualization tools for genome alignments
...of genomes. Following are the list of genome alignment visualization tools, which co...gicViewer Visualization of short read alignment, identification of genetic va...SAMtools tview Simple and fast text alignment viewer; NGS compatible http:...2246 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in deve...2236 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...flow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which includes Transcriptome/ Genome alignment, Differential expression anal...2226 days ago
Some useful Bioinformatics links
...m.nih.gov/pubmed/24185095 MAFFT ver.7 - a multiple sequence alignment program https://mafft.cbrc.jp/alignment/software/algorithms/algorithm...tomGenomes.html Dot: Interactive dot plot for genome-genome alignments https://dnanexus.github.io/...2203 days ago