Results for "Alignment"

Users

  • BOL

    Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .

    512 days ago

Blogs

Bookmarks

  • AVID: A Global Alignment Program

    A new global alignment method called AVID. The method is...icient, and practical for sequence alignments of large genomic regions up...om the comparison of assemblies to alignment of large syntenic genomic reg...a format for the representation of alignments and methods for their compar...

    125 days ago

  • Cgaln

    Cgaln (Coarse grained alignment) is a program designed to align a pair of who...a nominal desktop computer. Cgaln performs an alignment job in two steps, at the bloc...nucleotide level. The former "coarse-grained" alignment can explore genomic rearrange...

    216 days ago

  • +57 more Bookmarks

Files

Pages

Top-level pages

  • NGS Glossary !!

    ...tie: widely used, open source alignment software for aligning raw seq...Compact Idiosyncratic Gapped Alignment Report. A compact string that...data regarding a read and its alignment. Elements include: whether th...s a sequencer-ready library. Alignment Mapping of sequence reads to...

    456 days ago

  • Next generation sequencing in R or bioconductor environment

    ...containers - GRanges, GRangesList and GappedAlignments - which are supporting other...and inspecting samtools BAM formatted binary alignment data. SAM/BAM is quickly beco...ides support for importing into R short read alignment data in BAM format (via Rsamt...

    1211 days ago

  • +12 more Top-level pages

Wire posts

  • MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

    1101 days ago

  • Alignathon: A collaborative competition to assess the state of the art in whole genome sequence alignment. http://compbio.soe.ucsc.edu/alignathon/index.html #Alignment #Simulation #Evolver

    1063 days ago

  • +23 more Wire posts

News

  • Update Genome Workbench 2.7.15 released

    ...including graphical sequence views, various alignment views, phylogenetic tree view...ures in Genome Workbench 2.7.15 Multiple Alignment View: implemented adaptive fe...ol: improved diagnostics of errors Multiple Alignment View: optimizations to avoid...

    1307 days ago

  • PhylomeDB

    ...through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provid...nt genomes , including Maximum Likelihood or Bayesian tree inference, alignment trimming and evolutionary mod...

    1506 days ago

  • +2 more News

Opportunity posts

ResearchLabs posts

  • Raphael Lab

    ...and evolution, and network analysis of somatic mutations in cancer. Earlier research included topics in comparative genomics, multiple sequence alignment, and motif finding. More a...

    814 days ago

Fun

Video

Bio-Scripts

Groups

  • Ruby and BioRuby

    Ruby and BioRuby

    ...1990s by Yukihiro "Matz" Matsumoto in Japan. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, tools for...

    1507 days ago

  • Metabolomics

    Metabolomics

    ...: http://www.nutrigenomics.biz/downloadattachment/33374/Brown.pdf http://journals.sfu.ca/rncsb/index.php/csbj/article/view/csbj.201301004/205 Alignment tools for this include: mz-Mi...

    1292 days ago

Tags

  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    1495 days ago

  • Dynamic Programming Alignment

    lecture 9, Chem. C100, Spring 2013, UCLA

    Tags: Dynamic Programming, Alignment, Bioinformatics, Algorithms

    1496 days ago

  • +54 more Tags

Comments