Results for "Analysis"

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  • HOMER: Software for motif discovery and next-gen sequencing analysis

    ...w before diving head first into more advanced analysis tools such as HOMER. Setti...De novo transcript discovery and differential analysis with Cufflinks Differential...microarray or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...

    2894 days ago

  • GATB : Genome Analysis Toolbox with de-Bruijn graph

    The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...

    2892 days ago

  • AccNET

    ...isms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the analysis capability. Networks offer a...

    2730 days ago

  • Hagfish - assess an assembly through creative use of coverage plots

    Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst other...

    2869 days ago

  • GKNO

    gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html

    2869 days ago

  • Cytoscape

    Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

    2867 days ago

  • methylKit

    methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its...

    2856 days ago

  • Blobology

    ...onal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...

    2846 days ago

  • GAEMR

    ...nbsp;Reporting (GAEMR) package is an assembly analysis framework composed a number o...ed as a single program to generate a complete analysis report, or executed individua...input format to be entered into GAEMR’s analysis pipeline, hence enabling the...

    2845 days ago

  • Anvio

    In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the...lopment. Here is the acknowledgements section of our methods paper An analysis and visualization platform fo...

    2842 days ago