Results for "Analysis"
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statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...2864 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your...2859 days ago
- ...AMtools is a popular open-source tool used in next-generation sequence analysis. This primer provides an intr...SAMtools, and is geared towards those new to next-generation sequence analysis. The primer is also designed...
2858 days ago
- ...ve data visualization, integration, and mining. Currently, there is no software that can take full advantage of network theory approaches for the analysis of chromatin interaction data...
2854 days ago
- ...for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the n...
2852 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. &nbs...2846 days ago
- Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...
2826 days ago
- ...ludes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitabl...Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis...
2612 days ago
- ...orkflow, with several possible post-treatments meant to facilitate the analysis of the results. The choice of...ference genome/transcriptome and on the need to perform a differential analysis, as summarised in the followi...
2804 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1211 days ago
