Results for "Analysis"
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gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/Tags: Bioinformatics, Analysis, NGS, Online, GKNO
2649 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit processor and build environment 150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed f...
Tags: Bioinformatics, Analysis, Progressive Cactus, Genome
2649 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...
Tags: Bioinformatics, Analysis, Assembly, Genome, Harvest, Alignment, Tools
2635 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint presentations) to help you get started with your data processing, as well as...
Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, LongReads, Reads
2611 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows: For each genome, obtain a set of exon annotations. These annotations can be a combination of both exon pred...
Tags: Bioinformatics, Analysis, Genome, Mercator
2629 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on mu...Tags: Bioinformatics, DnaSP, Software, Analysis, DNA, Polymorphism
2629 days ago
- The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network structural properties. Edges are drawn as curved links. Simple and interpretable. The purpose of the hi...
Tags: Bioinformatics, Analysis, Assembly, Genome, Visialization, Tool, View, Hive, Plot, HivePlot
2619 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of assembly contigs against the reference. The output is th...
Tags: Bioinformatics, Analysis, Assembly, Genome, ABACAS, Plot, View
2619 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:http://sourceforge.net/projects/brig If you have any questions or comments, post th...
Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST
2619 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count,&...
Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM
2611 days ago
