Results for "Analysis"

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  • HiCdat

    HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic and epigenomic featu...

    Tags: Bioinformatics, HiC, Analysis, HiCdat, Annotation

    530 days ago

  • AccNET

    AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a...

    Tags: Bioinformatics, Analysis, NGS, AccNET, Genome, Network

    292 days ago

  • methylKit

    methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal ...

    Tags: Bioinformatics, methylKit, Methylation, DNA, Analysis, Genome, NGS, Sequence

    417 days ago

  • Anvio

    In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who directly or indirectly contributed to its development. ...

    Tags: Bioinformatics, Analysis, Visualization, Platform, Omics, NGS, Anvio

    404 days ago

  • KisSplice

    KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each...

    Tags: Bioinformatics, Analysis, NGS, KISSPLICE, Transcriptome, Assembler, Genome

    344 days ago

  • A5-miseq

    _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not the right tool for the job. In order to produce ...

    Tags: Bioinformatics, Analysis, NGS, A5-miseq, NGOPT Assembler, Genome

    342 days ago

  • QuIN’s web server

    Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA...

    Tags: Bioinformatics, Analysis, Visualization, Chromatin, NGS, HiC

    393 days ago

  • Genome Workbench 2.10.7

    Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improvements and fixes, see the release notes:https://ncbi.nlm.nih.gov/tools/gbench/releasenotes New Features BLAST Tool: added s...

    Tags: Bioinformatics, Analysis, Visualization, Genome, Workbench, BLAST, Tree View.

    389 days ago

  • Machine Learning !!!

    In machine learning, computers apply statistical learning techniques to automatically identify patterns in data. These techniques can be used to make highly accurate predictions. Keep scrolling. Using a data set about homes, we will create a machine learning model to distinguish h...

    Tags: Bioinformatics, Analysis, Visualization, R, Statistics, Learn, Machine Learning

    389 days ago

  • Bioinformatics tools and software

    USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...

    Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software

    385 days ago