Tags: Bioinformatics, Analysis, Assembly, Genome, Visialization, Tool, View, Hive, Plot, HivePlot
2620 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, ABACAS, Plot, View
2620 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST
2620 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM
2612 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencin...Tags: Bioinformatics, Analysis, Assembly, Genome, ConPADE, Polyploidy
2612 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, FinisherSC
2609 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly autom...Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, Improve, PBSuite, PBJelly, PBHoney
2609 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage ...Tags: Bioinformatics, Analysis, Assembly, Genome, Split, Reads
2608 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, MyCC, Binning
2605 days ago
Tags: Bioinformatics, Analysis, Genome, Bacteria, Compare, CLgenomics
2605 days ago