Results for "Analysis"

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  • Artemis Comparison Tool (ACT)

    ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation. It...

    Tags: Bioinformatics, Analysis, NGS, Artemis, Comparison Tool, ACT, Genome

    292 days ago

  • BRAKER

    Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art performance across a wide range of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervis...

    Tags: Bioinformatics, Analysis, NGS, Braker, Annotation, Genes, Predictions, Genome

    298 days ago

  • Redundans

    Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs, paired-end and/or mate pairs sequencing libraries and returns scaffolded homozygous genome assembly, that should be less fragmented and with total size ...

    Tags: Bioinformatics, Analysis, NGS, Redundans, Assembly, Heterozygous, Genome

    298 days ago

  • R-chie

    R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package power...

    Tags: Bioinformatics, Analysis, NGS, R-chie, Genome, RNA, Plot, Visualize

    298 days ago

  • CIRCOS Visualize !!

    Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data values must be non-negative integers. Data must be space-separated (one or more tab or space, which will be collapsed). ...

    Tags: Bioinformatics, Analysis, NGS, CIRCOS, Genome

    297 days ago

  • NGS Tutorial

    These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive e...

    Tags: Bioinformatics, Analysis, NGS, Tutorial, Assembler, Genome

    294 days ago

  • Assembly tutorial PPT

    Saved Cornell University assembly workshop PPT. Reference:  http://cbsu.tc.cornell.edu/lab/doc/assembly_workshop_20150420_lecture1.pdf

    Tags: Bioinformatics, Analysis, NGS, Workshop, Cornell, Genome, PPT

    292 days ago

  • Structural variants PPT

    1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference:  https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf

    Tags: Bioinformatics, Analysis, NGS, Structure, Variations, Genome

    292 days ago

  • Sybil

    The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was developed by the bioinformatics department at The Institute for Genomic Research (TIGR) and development continues at the J. Craig Venter Institute (...

    Tags: Bioinformatics, Analysis, NGS, Comarative genomics, Sybil, Genome

    292 days ago

  • GAGE : Genome Assembly Gold-standard Evaluation

    GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been publishe...

    Tags: Bioinformatics, Analysis, NGS, Validation, Assembly, Genome

    292 days ago