A PhD thesis on comparative genomics "METHODS FOR HIGH-THROUGHPUT COMPARATIVE GENOMICS AND DISTRIBUTED SEQUENCE ANALYSIS" @ http://drum.lib.umd.edu/bitstream/handle/1903/11669/Angiuoli_umd_0117E_12062.pdf;jsessionid=A30813F9A1A23A54D917BC34109FE38D?sequence=1
An intersting paper explaining comparative genomics in metazoan eukaryotes "COMPARATIVE GENOMICS: GENOME-WIDE ANALYSIS IN METAZOAN EUKARYOTES" https://www.cs.rice.edu/~devika/comp470/papers/ureta-vidal2003.pdf
A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Sac...the 289 human disease genes examined and provides the foundation for rapid analysis of some of the basic processe...
...ch.org/ . FunRich is a stand-alone software tool used mainly for functional enrichment and interaction network analysis of genes and proteins. Besides, the results of the analysis can be depicted graphically i...
MEDIPS: genome-wide dierential coverage analysis of sequencing
MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments https://www.bioconductor.org/packages/3.3/bioc/vignettes/MEDIPS/inst/doc/MEDIPS.pdf
...way graph with the mapped data. In addition, Pathview also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.
Improved data analysis for the MinION nanopore sequencer
A complete bacterial genome assembled de novo using only nanopore sequencing data