BOL: Results for "Annotated"

Results for "Annotated"

- Jitendra Narayan@admin
Tools to detect synteny blocks regions among multiple genomes
...and novel structural features of study species by comparing to a well annotated reference sequence, thus enab...n them. GSV also allows users to upload annotation files to visualize annotated regions in addition to synten...
2595 days ago
- Jit@jit.aber
List of gene ontology software and tools
...logy (GO) disclaimer icon associated with those genes. It provides several tools to view/access the GO term hierarchy, full listing of GO terms annotated with the genes associated wit...
3694 days ago
+6 more Blogs

- Jitendra Narayan@admin
RATT
RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly version...
2994 days ago
- Jit@jit.aber
BioToolbox
...le formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting annotated features, collecting genomic...
2983 days ago
+26 more Bookmarks

- Jitendra Narayan@admin
Bioinformatics Definitions
...ly valuable through their annotation. Several layers of analysis with bioinformatics tools are necessary to arrive from a raw DNA sequence at an annotated protein sequences: establi...
3932 days ago
- John Parker@parker
Next generation sequencing in R or bioconductor environment
...a Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning to annotated genomic regions. The package...
3609 days ago
+6 more Top-level pages

- Jit@jit.aber
Scientists map 17,294 proteins produced in human body
...e antibody-based Human Protein Atlas programme http://www.humanproteomemap.org/ -Proteogenomic analysis by identifying translated proteins from annotated pseudogenes, non-coding RNAs...
3614 days ago
- Jit@jit.aber
Ensembl 27
What is new? Expansion of Protists and Fungi with hundreds of annotated genomes Variation data for bread wheat, rice, Aedes aegypti, and Ixodes scapularis Whole genome alignments...
3230 days ago

- Martin Jones@martin
Protein function annotation and machine learning - UPMC - Paris, France
...obabilistic models coding for about 10^7 evolutionary protein pathways. Such models will be used to search for specific domains in genomes to be annotated. Our previous methodology nee...
3549 days ago

- Jit@jit.aber
Downloading GATK !
...rted in three different files. NeuralNetInference (EXPERIMENTAL Tool) Apply 1d Convolutional Neural Net to filter annotated variants ValidateBasicSo...
2060 days ago
- Jit@jit.aber
Install vcftools on Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/annotated$ sudo apt install vcftools [sudo] password for jit: Reading package lists... Done Building dependency tree Reading state inform...
1510 days ago
+1 more Bio-Scripts

- Jit@jit.aber
Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"
...lly, provides three types of quality control: read counts (such as duplicate reads, mapped reads and mapped unique reads, rRNA reads, transcript-annotated reads, strand specificity), c...
2122 days ago
- Marysia@marysia
Comment on "Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms"
Thanks for GeneSCF, it is really useful. I am dealing with new genome, with priliminary annotations. The annotated ids are not universally accepted. Once I tried to convert...
2619 days ago