slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotat...Tags: slacTree, SVG, Large, Annotated, Circular, Tree, drawing
2451 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for the...Tags: Synima, Synteny, imaging, tool, annotated, genome, assemblies
1966 days ago
Tags: Sequence, Ontology, Bioinformatics, Analysis, SOBA, tool, statistical, graphical, summary, annotated, genome
1335 days ago