Results for "Annotated"

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  • slacTree: SVG Large Annotated Circular Tree drawing

    A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotat...

    Tags: slacTree, SVG, Large, Annotated, Circular, Tree, drawing

    2451 days ago

  • Synima: a Synteny imaging tool for annotated genome assemblies

    Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for the...

    Tags: Synima, Synteny, imaging, tool, annotated, genome, assemblies

    1966 days ago

  • Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome

    We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. We envisage its use during annotation jamborees, genome comparison and for use by developers for rapid feedback during annotation software deve...

    Tags: Sequence, Ontology, Bioinformatics, Analysis, SOBA, tool, statistical, graphical, summary, annotated, genome

    1335 days ago