Results for "Annotation"
Users
Skills: Protein sequence/structure annotation2283 days ago
- Brief description: genome annotation, transcriptome, RNA-seq, ChIP-seq, ChRIP, PARCLIP, cancer, noncoding, long-noncoding RNAS, epigenetics
1281 days ago
Blogs
Five points for bioinformatics software/tools
...of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end, I would like to...3692 days ago
Tools to detect synteny blocks regions among multiple genomes
...of study species by comparing to a well annotated reference sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia (http://arxiv.org/...2595 days ago
- +9 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...12/134/abstract WEP: a high-performance analysis pipeline for whole-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud computing-b...3472 days ago
Public Databases for Bioinformatics !
...ssible data should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont...iles/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.a...1124 days ago
- +108 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...ller tool. A final list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected S...3774 days ago
Pages
- ...evelopment), and will eventually supersede the slower Ruby MRI. Ruby Quick Referencehttp://www.zenspider.com/Languages/Ruby/QuickRef.html Ruby Annotationhttp://www.w3.org/TR/ruby/ Ru...
3932 days ago
Genome Assembly Tools and Software - PART2 !!
...correcting sequence errors and transferring annotation. ShoRAH 0.8.2 – Short...n-reading frames and taxonomic or functional annotations. TIGER – DNA Sequence...is a pipeline for the automated assembly and annotation of microbial genomes from hig...2670 days ago
- +3 more Pages
Top-level pages
- ...r example, SWISSPROT [1] contains verified protein sequences and more annotations describing the function of a...major problem are errors in databanks and databases (mostly errors in annotation), in particular since errors...
3932 days ago
- ...nomics Resource to Study Gene and Genome Evolution in Plants: VISTA: Software for Genomics Artemis Artemis is a free genome viewer and annotation tool that allows visualizatio...
3926 days ago
- +19 more Top-level pages
Wire posts
News
Conserved Domain Database (CDD) version 3.11 released
...2.28 and up) using composition-based scoring. This abolishes the need to mask out compositionally biased regions in query sequences; Domain annotation displays in CD-Search, BATCH...3712 days ago
A comprehensive atlas of human gene activity released !!!
...journals. The work is the result of years of concerted effort among 250 experts from more than 20 countries as part of FANTOM 5 (Functional Annotation of the Mammalian Genome). The...3517 days ago
- +3 more News
Opportunity posts
Research Fellow @ Mendel laboratory
...ojects, dealing with microarrays, RNA-Seq and miRNA-Seq data. Main activities will be: (i) data analysis (short-reads mapping, variants call and annotation, functional enrichment analys...3798 days ago
Visiting Scientist - Computational Genomics (two positions)
...Genome wide association study (GWAS) related analysis- LD analysis, hapmap and trait mapping Expression analysis based on RNA-Seq data, annotation, gene ontology and metabolic...3574 days ago
- +13 more Opportunity posts
ResearchLabs posts
- ...an Swine Fever Viruses Iridoviruses Baculoviruses Research Area Custom searches of the viral databases Building new tools . The genome annotation Link @ http://athena.bioc...
3932 days ago
- Responsible (a) for developing Chemgenome, Bhageerath & Sanjeevini methods & softwares for genome annotation, protein tertiary structure prediction & computer aided drug des...
3932 days ago
- +7 more ResearchLabs posts
Video
- Dr. Rob Edwards describes some of the problems, challenges, and approches in genome annotation, with a particular emphasis on how the Fellowship for the Interpretation of Genomes (FIG) developed subsystems using the SEED database available at http://www.theseed.org/
3890 days ago
Bio-Scripts
get GC across the entire CDS !
#look at GC across the entire CDS. gffread -x - -g | \ seqtk comp - | \ awk -v OFS="\t" '{ print $1, "0", $2, ($4 + $5) / $2 }'1378 days ago
- ..../GCF_0355.2_L0_genomic.gff ../../GCF_001039355.2_L0_genomic.fna > La.cds.fa #Find more at http://blog.shenwei.me/extract-cds-fastas-from-a-gff-annotation-reference-sequence/
1188 days ago
Tags
- Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available browsers: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome....
Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed
3899 days ago
- Dr. Rob Edwards describes some of the problems, challenges, and approches in genome annotation, with a particular emphasis on how the Fellowship for the Interpretation of Genomes (FIG) developed subsystems using the SEED database available at http://www.theseed.org/
Tags: Genomes, Annotation
3890 days ago
- +62 more Tags
Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already...407 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...rest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate the genes in each g...408 days ago
- +18 more Comments
