2570 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzin...gene set libraries available for analysis and download. In total, Enrichr c...mproved application programming interface and visualization of the results...du/Enrichr. https://academic.oup.com/nar/article-...2527 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipel...esigned to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation...enes, control regions, direct and inverted repeats, insertion s...eline (PGAAP; see Pubmed Article) developed in 2005 has be...2508 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annot...eline designed to find, annotate and quantify Transposable Element...does not require genome assembly and works on small datasets (<...bsp;https://academic.oup.com/gbe/article/7/4/1192/533768 output examples of quantification and TE l...2308 days ago
Japanese Multi Omics Reference Panel, jMorp
Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtai...data were measured by proton NMR and LC-MS, and proteome data were...S. We could measure several thousands of metabolites including the...s://academic.oup.com/nar/advance-article/...2288 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functi...ces, and supports the reading and writing of phylogenetic data in a...ization, are also distributed and installed as part of the liba...org/DendroPy/ Requirements and Installation DendroPy 4.x ru...2166 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how...ibed in Hahn et al. 2013. The full article ca...e found here. Kindly cite the article if you are using MITObim...the Iontorrent, 454 and PacBio sequencing p...c tutorials for how to run MITObim and I en...2151 days ago
2117 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information...digestion, double-enzyme digestion and size selection process. It ca...nalyze multiple genomes at one run and generates concise comparison...tp://www.sciencedirect.com/science/article/...2116 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignme...mum, by exploring all possible alignments and choosing the best. A scoring...rix, minus penalties arising from opening and exte...2109 days ago