Results for "Assemble"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...tistics for: reads, contigs and snps. Align/Assemble to a reference BFAST - Blat-l...rs are from CRIBI in Italy. Win/Linux. RMAP - Assembles 20 - 64 bp Illumina reads to...nome.ucla.edu/index.php/BFAST De novo Align/Assemble ABySS - Assembly By Short Seq...3504 days ago
Software packages for next gen sequence analysis
...Search - Fledgling commercial product. Align/Assemble to a reference * BFAST - Blat...are from CRIBI in Italy. Win/Linux. * RMAP - Assembles 20 - 64 bp Illumina reads to...ports Illumina and SOLiD data. De novo Align/Assemble * ABySS - Assembly By Short S...3227 days ago
Genome Assembly Tools and Software - PART1 !!
...amp; Analysis DNA Sequence Assembler is revolutionary bioinformat...BinPacker is a novel de novo assembler by modeling the transcriptom...pt. Rnnotator was designed to assemble Illumina single or paired-end...parallel, paired-end sequence assembler that is designed for short r...2670 days ago
Run miniasm assembler on nanopore reads !
...sm is a very fast OLC-based de novo assembler for noisy long reads. It tak...sp;GFA format. Different from mainstream assemblers, miniasm does not have a co...0000.eps > AONTself10000final.eps Assemble with miniasm: miniasm -f O...2315 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or...ina forward reads illumina_R2.fastq.gz: the Illumina reverse reads Assemble Run Spades: spades.py -1...810 days ago
Mitochondrial genome assembly tools !
...ndrial genome assembly tools: MitoFinder: Mitofinder is a pipeline to assemble mitochondrial genomes and ann...igh-throughput sequencing data. SPAdes: SPAdes (St. Petersburg genome assembler) is a versatile genome assem...227 days ago
