Results for "Assembler"


  • Want to Know which genome assembler rule the world ?

    Assemblathon 2: evaluating de novo methods of genome assembly

    Tags: Sequencing, DNA, Genome Assembly, Assembler, Omics, de novo

    1619 days ago

  • SPAdes Genome Assembler! #Genome #Assembler #Omics #NGS

    Tags: Genome, Assembler, Omics, NGS

    1303 days ago

  • PLATform for Assembling NUcleotide Sequences #Platanus #Assembler #Genome

    Tags: Platanus, Assembler, Genome

    651 days ago

  • PAired-eND Assembler for DNA sequences #Sequence #Assembler #PANDAseq

    Tags: Sequence, Assembler, PANDAseq

    651 days ago

  • SPAdes

    SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAdes. SPAdes version 3.7.1 was released under GPLv2 on March 8, 2016 and can be downloaded from http://bioinf.spbau...

    Tags: Bioinformatics, NGS, Assembly, Assembler, SPAdes, Reads, Illumina

    637 days ago

  • CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.

    Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in fo...

    Tags: Bioinformatics, FASTQ, NGS, Assembly, Genome, CANU, Assembler, Tool, Software

    614 days ago

  • Platanus

    Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4. To cite Platanus, please use the following: Kajitani R, Toshimoto K, Noguchi H, Toyoda A, Ogura Y,...

    Tags: Bioinformatics, NGS, Assembly, de novo, Sequence, Assembler, Heterozygous

    614 days ago

  • KisSplice

    KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each...

    Tags: Bioinformatics, Analysis, NGS, KISSPLICE, Transcriptome, Assembler, Genome

    518 days ago

  • NGS Tutorial

    These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive e...

    Tags: Bioinformatics, Analysis, NGS, Tutorial, Assembler, Genome

    498 days ago

  • OPERA : Optimal Paired-End Read Assembler

    OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program ( It uses information from paired-end/mate-pair/long reads to order and orient the intermediate contigs/scaffolds assembled in a genome assembly project, in a process known as ...

    Tags: Bioinformatics, Analysis, NGS, OPERA, Assembler, Genome

    495 days ago