Results for "Assemblies"
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...gnment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using a cost function. The co...imbing to minimize cost over thousands of candidate assemblies.1082 days ago
- ...a software tool which can be used to: Automatically improve draft assemblies Find variation among strains...or block substitution events Gap filling Identification of local misassemblies, including optional opening o...
2998 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
2998 days ago
- ...version of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36)...TF, VCF. CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for...
2998 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It...
2996 days ago
- ...of data to an assembly of other sequencing type (a semi-hybrid assembly (or mapping)) or by mapping a data against consensus sequences of other assemblies (a simple mapping). The MIRA...
2941 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works...th with and without a given reference genome.The tool accepts multiple assemblies, thus is suitable for compari...2940 days ago
REAPR: a universal tool for genome assembly evaluation
...lag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produ...gment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mappe...2940 days ago
- ...ng an entire large genome. DISCOVAR variant calling is under active development and transitioning to VCF. DISCOVAR de novo can generate de novo assemblies for both large and small geno...
2929 days ago
- SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. This manual will help you to install and run SPAde...
2928 days ago
