Results for "Assemblies"


  • GAM-NGS: genomic assemblies merger for next generation sequencing

    GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With more than 20 available assemblers it is hard to select the best...

    Tags: GAM-NGS, Genomic, Assemblies, Merger, Sequencing, NGS

    279 days ago

  • npScarf: Scaffolding and Completing Assemblies in Real-time Fashion

    npScarf ( is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of position...

    Tags: npScarf, Scaffolding, Completing, Assemblies, PacBio

    275 days ago

  • GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.

    GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines contig order, distance and orientation...

    Tags: GRASS, Generic, Algorithm, Scaffolding, NGS, Sequencing, Assemblies

    275 days ago

  • SuRankCo: supervised ranking of contigs in de novo assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. https://bm...

    Tags: SuRankCo, Supervised, Ranking, Contigs, Assemblies

    274 days ago

  • CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies

    CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license. Main features: works with any number of scaffold assemblies in de-novo non-progressive f...

    Tags: CAMSA, tool, Comparative, Analysis, Merging, Scaffold, Assemblies

    56 days ago

  • Bandage: interactive visualization of de novo genome assemblies

    Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequ...

    Tags: Bandage, interactive, visualization, de novo, genome, assemblies

    80 days ago