Results for "Assembly"
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Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood t...3210 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig a...rs the number of missing, duplicated and single BUSCO genes within the assembly. HapSolo performs hill climbi...
1082 days ago
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1082 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
2999 days ago
- ...tion from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can als...
2999 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
2998 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh...
2998 days ago
- ...s of transferring annotations from one genome assembly to another. Usually lift over...done because there is a new, improved genome assembly for the species and good qual...assembly. The idea is simple: align the new assembly with the old one (e.g., with...
2996 days ago
- ...s they are still unknown. Recently, the chromatin conformation assay Hi-C has been re-purposed for diverse applications, including de novo genome assembly, deconvolution of metagenomic...
2994 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transc...2954 days ago
