2914 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2914 days ago
REAPR: a universal tool for genome assembly evaluation
...aluates the accuracy of a genome assembly using mapped paired end reads...t can be used in any stage of an assembly pipeline to automatically bre...olds and flag other errors in an assembly for manual inspection. It rep...order to score each base of the assembly. http://www.sanger.ac.uk/sci...2913 days ago
2894 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...io RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four s...2877 days ago
2880 days ago
2877 days ago
Hagfish - assess an assembly through creative use of coverage plots
...) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structur...2869 days ago
2846 days ago
2845 days ago