Results for "Assembly"
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BLAST Ring Image Generator (BRIG)
...-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is avai...2764 days ago
- ...lassification of raw sequence reads into groups representing the same or similar species. Such classification is a useful prerequisite for genome assembly and for analysis of the biolo...
2754 days ago
- ...hort, or paired-end reads, Ribbon can also load coordinate files from whole genome aligners such as MUMmer. Therefore, Ribbon can be used to test assembly algorithms or inspect the sim...
2743 days ago
- ...ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation...
2730 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. The project page is ava...2711 days ago
- ...ly from the reads used in the experiment. Our approach applies de novo assembly software to experimental read...on closely related sequences RECORD outperforms more general assisted-assembly software. More at https...
2708 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will ap...g a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2704 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2703 days ago
Standardized velvet assembly report
...bsp;Substitute fastqAllSize for fastq files. ./permute.sh mysequences (leave out the .fa) https://github.com/leipzig/standardized-velvet-assembly-report2694 days ago
- ...the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly from Illumina reads. http://evomics.org/learning/assembly-and-alignment/velvet/
2694 days ago
