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Results for "Assembly"

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• • Rahul Agarwal@raag

  

  Comparison of Short Read De Novo Alignment Algorithms

  Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms  Author: Nikhil Gopal

  Tags: Sequencing, assembly, de novo assembly, velvet

  3900 days ago

• • Rahul Agarwal@raag

  

  Genome Assembly & Analysis Tool Box (GATB)!! http://gatb.inria.fr/ #genome #assembly

  Tags: genome, assembly

  3484 days ago

• • Jit@jit.aber

  

  De #Bruijn #Graph #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf

  Tags: Bruijn, Graph, assembly

  2856 days ago

• • Jit@jit.aber

  

  #Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

  Tags: Contiguous, accurate, assembly, metazoan

  2614 days ago

• • Jit@jit.aber

  

  Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

  Tags: Overlap, Consensus, assembly, OLC, Assembly

  2609 days ago

• • Jit@jit.aber

  

  Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

  Tags: Prokaryotic, genome, assembly, annotation

  2607 days ago

• • Jit@jit.aber

  

  Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

  Tags: assembly, Tutorial, MIRA, IonTorrent

  2581 days ago

• • Jit@jit.aber

  

  All about #newbler #assembly https://contig.wordpress.com/ #NGS

  Tags: newbler, assembly, NGS

  2521 days ago

• • Jit@jit.aber

  

  Omega2: metagenome assembly pipeline

  Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using m...

  Tags: Omega2, metagenome, assembly, pipeline

  2481 days ago

• • Jit@jit.aber

  

  Unicycler: Hybrid assembly pipeline for bacterial genomes

  Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible asse...

  Tags: Unicycler, Hybrid, assembly, pipeline, bacterial, genomes

  2358 days ago

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