Results for "Assembly"

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  • Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria

    Tags: Genome, Assembly, Reference, Ragout, Bacteria

    1271 days ago

  • SAGE: String-overlap Assembly of GEnomes http://www.biomedcentral.com/1471-2105/15/302/abstract #Genome #SAGE #Assembly

    Tags: Genome, SAGE, Assembly

    1259 days ago

  • Genome assembly algorithms http://www.nature.com/subjects/genome-assembly-algorithms #NGS #Assembly #Algorithms #Genome #Tools

    Tags: NGS, Assembly, Algorithms, Genome, Tools

    1234 days ago

  • De novo genome assembly: what every biologist should know http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1935.html #NGS #Assembly #Genome #Sequencing #DeNovo

    Tags: NGS, Assembly, Genome, Sequencing, DeNovo

    1227 days ago

  • An Opinionated History of Genome Assembly Algorithms http://www.homolog.us/blogs/blog/2014/02/21/opinionated-history-genome-assembly-algorithms/ #NGS #Assembly #History

    Tags: NGS, Assembly, History

    1227 days ago

  • Whar are N50 and L50 of a contig assembly file? How to calculate it?

    I am currently dealing with new contig assembly dataset, and bit confused about N50 and L50 stuff ....

    Tags: NGS, N50, L50, Contig, Assembly, Genome

    723 days ago

  • MAKER

    MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-ini...

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, MAKER, Genome, Annotation, Pipeline, NGS, Assembly

    749 days ago

  • BUSCO

    Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, BUSCO, Genome, Annotation, Pipeline, NGS, Assembly, Orthologs

    749 days ago

  • RATT

    RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like Plasmo...

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, RATT, Genome, Annotation, Pipeline, NGS, Assembly

    749 days ago

  • liftover

    Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/

    Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics

    748 days ago